Installation • NPATools

NPATools requires the following packages:

BiocParallel
brainGraph
circlize
ComplexHeatmap
DOSE
ggplot2
graphics
grDevices
igraph (>= 1.5.0)
KEGGREST
Matrix
methods
openxlsx
pals
proxy
qvalue
reshape2
stats
spatstat.univar
utils

Bioconductor packages can be installed as follows:

if (!require("BiocManager", quietly = TRUE)){
  install.packages("BiocManager")
}
BiocManager::install(c("<packagename1>", "<packagename2>", "..."))

CRAN packages can be installed as follows:

install.packages(c("<packagename1>", "<packagename2>", "..."))

Once all dependencies are in place, NPATools can be installed from github as follows:

devtools::install_github("emosca-cnr/NPATools")

To load the package:

library(NPATools)