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Transcriptional Complexity and Entropy

Usage

transcr_compl(
  scMuffinList = NULL,
  min_counts = 5,
  min_cells = 10,
  min_genes = 500
)

Arguments

scMuffinList

scMuffinList object

min_counts

minimum number of counts

min_cells

minimum number of cells in which a gene must have at least min_counts counts

min_genes

minimum number of genes that a cell must express with at least min_counts counts

Value

scMuffinList with transcr_compl element a list with summary (full is empty):

  • tot_counts, total number of transcripts;

  • n_genes, total number of expressed genes;

  • C, transcriptional complexity;

  • H, transcriptional entropy;