Prepare cluster markers list Prepare cluster markers list for inter_dataset_comparison

Usage

prepare_cluster_markers_list(
  marker_table_list = NULL,
  effect_size = "avg_log2FC",
  effect_size_thr = 0.25,
  sig_column = "p_val_adj",
  sig_thr = 0.1,
  id_column = "gene",
  cluster = "cluster",
  top = 500
)

Arguments

marker_table_list: list of marker tables, as produced by Seurat::FindAllMarkers
effect_size: name of effect size column
effect_size_thr: threshold over effect size
sig_column: column with significance score
sig_thr: threshold over effect significance score
id_column: column with IDs
cluster: column with cell cluster
top: maximum number of markers per cluster