CNV Heatmap — heatmap_CNV • scMuffin

CNV Heatmap

Usage

heatmap_CNV(
  scMuffinList = NULL,
  genes = NULL,
  genes.labels = FALSE,
  mark.detected.cnv = FALSE,
  file = NULL,
  width = 180,
  height = 180,
  units = "mm",
  res = 300,
  cluster_fontsize = 8,
  chrom_fontsize = 8,
  legend_fontsize = 8,
  genes.labels.fontsize = 8,
  ...
)

Arguments

scMuffinList: scMuffinList object
genes: gene labels to show as row annotation
genes.labels: whether to show gene labels or just mark their position
mark.detected.cnv: whether to show detected CNV regions
file: File name to save the figure as png file
width: image width
height: image height
units: image units
res: image resolution
cluster_fontsize: cluster fontsize
chrom_fontsize: chromosome fontsize
legend_fontsize: legend fontsize
genes.labels.fontsize: gene labels fontsize
...: arguments passed to ComplexHeatmap::Heatmap