Gene set scoring at cluster level — gs_scores_in_clusters • scMuffin

Gene set scoring in clusters

Usage

gs_scores_in_clusters(
  score_table = NULL,
  cell_clusters = NULL,
  ncells_min = 5,
  alt = "g",
  test = "t",
  fract_min = 0.5
)

Arguments

score_table: real data
cell_clusters: vector of cell clusters
ncells_min: minimum number of cells required for the calculation of the average signature in the cluster
alt: alterative passed to [wilcox.test()] or [t.test()]
test: type of test: t to use [t.test()]; wrs to use [wilcox.test()]
fract_min: only clusters with this fraction of cells with not null gene set score will be considered