Returns msigdb geneset in a format compatible with calculate_signatures()

Returns msigdb geneset in a format compatible with calculate_signatures()

Usage

get_msigdb_geneset(
  species,
  category = NULL,
  subcategory = NULL,
  type = "gene_symbol"
)

Arguments

species

Species name

category

MSigDB category name, see msigdbr_collections()

subcategory

MsigDB subcategory name, see msigdbr_collections()

type

Gene name of interest, can be gene_symbol or entrez_gene

Value

List with msigdb_output, the output of msigdbr::msigdbr, and path_list, the list of gene sets