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Barplot of cluster enrichment in a categorical feature

barplot_cluster.Rd

Produce barplots (1 for each cluster) of distribution of cells associated with the values of the selected feature. A png figure for each cluster is saved in dir_out.

Usage

barplot_cluster(
  scMuffinList = NULL,
  feature_name = NULL,
  feature_id = NULL,
  partition_id = NULL,
  dir_out = "./",
  only_pos_nes = TRUE,
  cex.axis = 0.8,
  p.type = c("p", "p_adj"),
  width = 180,
  height = 180,
  units = "mm",
  res = 300,
  legend.pos = "right"
)

Arguments

scMuffinList

scMuffinList object

feature_name

name of the features to be used.

feature_id

identifier of the feature to be used.

partition_id

one among the partitions

dir_out

string, output directory

only_pos_nes

whether to consider only positive enrichments

cex.axis

cex.axis

p.type

p for nominal p-value or p_adj for BH FDR.

width

image width

height

image height

units

image units

res

image resolution

legend.pos

position of barplot legend